Bibliography

Primary physical models in Otter are linked to the literature in theory pages and API docstrings. The bibliography is distributed with the Python package so installed documentation can resolve the same citation keys.

For the contributor policy and runtime config.citation(...) API, see Citing Otter. The repository mirror is CITATIONS.md.

[1]

Yaakov Rosenfeld and N. W. Ashcroft. Theory of simple classical fluids: universality in the short-range structure. Physical Review A, 20(3):1208–1235, 1979. doi:10.1103/PhysRevA.20.1208.

[2]

M. S. Wertheim. Exact solution of the Percus–Yevick integral equation for hard spheres. Physical Review Letters, 10(8):321–323, 1963. doi:10.1103/PhysRevLett.10.321.

[3]

Everett Thiele. Equation of state for hard spheres. The Journal of Chemical Physics, 39(2):474–479, 1963. doi:10.1063/1.1734272.

[4]

G. Faussurier. Description of strongly coupled yukawa fluids using the variational modified hypernetted chain approach. Physical Review E, 69(6):066402, 2004. doi:10.1103/PhysRevE.69.066402.

[5]

Hiroshi Iyetomi, Shuji Ogata, and Setsuo Ichimaru. Bridge functions and improvement on the hypernetted-chain approximation for classical one-component plasmas. Physical Review A, 46(2):1051–1058, 1992. doi:10.1103/PhysRevA.46.1051.

[6]

P. Tolias and F. Lucco Castello. Isomorph-based empirically modified hypernetted-chain approach for strongly coupled yukawa one-component plasmas. Physics of Plasmas, 26(4):043703, 2019. doi:10.1063/1.5089663.

[7]

C. E. Starrett and D. Saumon. A simple method for determining the ionic structure of warm dense matter. High Energy Density Physics, 10:35–42, 2014. doi:10.1016/j.hedp.2013.12.001.

[8]

G. Chabrier. An equation of state for fully ionized hydrogen. Journal de Physique, 51(15):1607–1632, 1990. doi:10.1051/jphys:0199000510150160700.

[9]

Susi Lehtola, Conrad Steigemann, Micael J. T. Oliveira, and Miguel A. L. Marques. Recent developments in Libxc: a comprehensive library of functionals for density functional theory. SoftwareX, 7:1–5, 2018. doi:10.1016/j.softx.2017.11.002.

[10]

Susi Lehtola and Miguel A. L. Marques. Reproducibility of density functional approximations: how new functionals should be reported. The Journal of Chemical Physics, 159(11):114116, 2023. doi:10.1063/5.0167763.

[11]

P. A. M. Dirac. Note on exchange phenomena in the Thomas atom. Mathematical Proceedings of the Cambridge Philosophical Society, 26(3):376–385, 1930. doi:10.1017/S0305004100016108.

[12]

John P. Perdew, Kieron Burke, and Matthias Ernzerhof. Generalized gradient approximation made simple. Physical Review Letters, 77(18):3865–3868, 1996. doi:10.1103/PhysRevLett.77.3865.

[13]

John P. Perdew, Kieron Burke, and Matthias Ernzerhof. Erratum: generalized gradient approximation made simple [physical review letters 77, 3865 (1996)]. Physical Review Letters, 78(7):1396, 1997. doi:10.1103/PhysRevLett.78.1396.

[14]

Felix Bloch. Bemerkung zur elektronentheorie des ferromagnetismus und der elektrischen leitfähigkeit. Zeitschrift für Physik, 57(7–8):545–555, 1929. doi:10.1007/BF01340281.

[15]

John P. Perdew and Yue Wang. Accurate and simple analytic representation of the electron-gas correlation energy. Physical Review B, 45(23):13244–13249, 1992. doi:10.1103/PhysRevB.45.13244.

[16]

John P. Perdew and Alex Zunger. Self-interaction correction to density-functional approximations for many-electron systems. Physical Review B, 23(10):5048–5079, 1981. doi:10.1103/PhysRevB.23.5048.

[17]

S. H. Vosko, L. Wilk, and M. Nusair. Accurate spin-dependent electron liquid correlation energies for local spin density calculations: a critical analysis. Canadian Journal of Physics, 58(8):1200–1211, 1980. doi:10.1139/p80-159.

[18]

J. Hubbard. The description of collective motions in terms of many-body perturbation theory. ii. the correlation energy of a free-electron gas. Proceedings of the Royal Society of London. Series A. Mathematical and Physical Sciences, 243(1234):336–352, 1958. doi:10.1098/rspa.1958.0003.

[19]

Kenichi Utsumi and Setsuo Ichimaru. Dielectric formulation of strongly coupled electron liquids at metallic densities. vi. analytic expression for the local-field correction. Physical Review A, 26(1):603–610, 1982. doi:10.1103/PhysRevA.26.603.

[20]

D. J. W. Geldart and S. H. Vosko. The screening function of an interacting electron gas. Canadian Journal of Physics, 44(9):2137–2171, 1966. doi:10.1139/p66-174.

[21]

G. Gregori, A. Ravasio, A. Höll, S. H. Glenzer, and S. J. Rose. Derivation of the static structure factor in strongly coupled non-equilibrium plasmas for x-ray scattering studies. High Energy Density Physics, 3(1–2):99–108, 2007. doi:10.1016/j.hedp.2007.02.006.

[22]

Aidan P. Thompson, Hasan Metin Aktulga, Richard Berger, Dan S. Bolintineanu, W. Michael Brown, Paul S. Crozier, Pieter J. in 't Veld, Axel Kohlmeyer, Stan G. Moore, Trung Dac Nguyen, Ray Shan, Mark J. Stevens, Julien Tranchida, Christian Trott, and Steven J. Plimpton. LAMMPS - a flexible simulation tool for particle-based materials modeling at the atomic, meso, and continuum scales. Computer Physics Communications, 271:108171, 2022. doi:10.1016/j.cpc.2021.108171.

[23]

C. E. Starrett and D. Saumon. Electronic and ionic structures of warm and hot dense matter. Physical Review E, 87(1):013104, 2013. doi:10.1103/PhysRevE.87.013104.

[24]

C. E. Starrett, N. R. Shaffer, T. Inerbaev, and D. Saumon. Wide ranging equation of state with tartarus: a hybrid green's function/orbital based average atom code. Computer Physics Communications, 235:50–62, 2019. doi:10.1016/j.cpc.2018.10.002.

[25]

Mandy Bethkenhagen, Bastian B. L. Witte, Maximilian Schörner, Gerd Röpke, Tilo Döppner, Dominik Kraus, Siegfried H. Glenzer, Philip A. Sterne, and Ronald Redmer. Carbon ionization at gigabar pressures: an ab initio perspective on astrophysical high-density plasmas. Physical Review Research, 2(2):023260, 2020. doi:10.1103/PhysRevResearch.2.023260.

[26]

Julian Lütgert, Samuel Schumacher, Johannes Rips, Chongbing Qu, Tilo Döppner, and Dominik Kraus. Jaxrts: a python package for simulating x-ray thomson scattering spectra from dense plasmas using jax. Computer Physics Communications, 325:110173, 2026. doi:10.1016/j.cpc.2026.110173.

[27]

C. E. Starrett, D. Saumon, J. Daligault, and S. Hamel. Integral equation model for warm and hot dense mixtures. Physical Review E, 90(3):033110, 2014. doi:10.1103/PhysRevE.90.033110.

[28]

M. Schörner, H. R. Rüter, M. French, and R. Redmer. Extending ab initio simulations for the ion-ion structure factor of warm dense aluminum to the hydrodynamic limit using neural network potentials. Physical Review B, 105(17):174310, 2022. doi:10.1103/PhysRevB.105.174310.

[29]

Z. A. Johnson, N. R. Shaffer, and M. S. Murillo. Quantum ornstein–zernike theory for two-temperature two-component plasmas. Physical Review E, 112(2):025207, 2025. doi:10.1103/5c29-kdx1.

[30]

William Daughton, Michael S. Murillo, and Lester Thode. Empirical bridge function for strongly coupled yukawa systems. Physical Review E, 61(2):2129–2132, 2000. doi:10.1103/PhysRevE.61.2129.

[31]

N. M. Gill, R. A. Heinonen, C. E. Starrett, and D. Saumon. Ion-ion dynamic structure factor of warm dense mixtures. Physical Review E, 91(6):063109, 2015. doi:10.1103/PhysRevE.91.063109.

[32]

Jean Clérouin, Grégory Robert, Philippe Arnault, Christopher Ticknor, Joel D. Kress, and Lee A. Collins. Evidence for out-of-equilibrium states in warm dense matter probed by x-ray thomson scattering. Physical Review E, 91(1):011101, 2015. doi:10.1103/PhysRevE.91.011101.

[33]

K. Wünsch, J. Vorberger, and D. O. Gericke. Ion structure in warm dense matter: benchmarking solutions of hypernetted-chain equations by first-principle simulations. Physical Review E, 79(1):010201, 2009. doi:10.1103/PhysRevE.79.010201.

[34]

C. E. Starrett, J. Daligault, and D. Saumon. Pseudoatom molecular dynamics. Physical Review E, 91(1):013104, 2015. doi:10.1103/PhysRevE.91.013104.

[35]

C. E. Starrett and D. Saumon. Equation of state of dense plasmas with pseudoatom molecular dynamics. Physical Review E, 93(6):063206, 2016. doi:10.1103/PhysRevE.93.063206.

[36]

C. E. Starrett and D. Saumon. Erratum: electronic and ionic structures of warm and hot dense matter [phys. rev. e 87, 013104 (2013)]. Physical Review E, 88(5):059901, 2013. doi:10.1103/PhysRevE.88.059901.

[37]

F. Lado, S. M. Foiles, and N. W. Ashcroft. Solutions of the reference-hypernetted-chain equation with minimized free energy. Physical Review A, 28(4):2374–2379, 1983. doi:10.1103/PhysRevA.28.2374.

[38]

Norman F. Carnahan and Kenneth E. Starling. Equation of state for nonattracting rigid spheres. The Journal of Chemical Physics, 51(2):635–636, 1969. doi:10.1063/1.1672048.

[39]

S. Ichimaru, H. Iyetomi, and S. Tanaka. Statistical physics of dense plasmas: thermodynamics, transport coefficients and dynamic correlations. Physics Reports, 149(2–3):91–205, 1987. doi:10.1016/0370-1573(87)90125-6.

[40]

G. Chabrier and A. Y. Potekhin. Equation of state of fully ionized electron-ion plasmas. Physical Review E, 58(4):4941–4949, 1998. doi:10.1103/PhysRevE.58.4941.

[41]

Mohandas Pillai, Joshua Goglio, and Thad G. Walker. Matrix numerov method for solving schrödinger's equation. American Journal of Physics, 80(11):1017–1019, 2012. doi:10.1119/1.4748813.

[42]

R. Piron and T. Blenski. Variational-average-atom-in-quantum-plasmas code and virial theorem: equation-of-state and shock-hugoniot calculations for warm dense al, fe, cu, and pb. Physical Review E, 83(2):026403, 2011. doi:10.1103/PhysRevE.83.026403.

[43]

B. Wilson, V. Sonnad, P. Sterne, and W. Isaacs. Purgatorio—a new implementation of the inferno algorithm. Journal of Quantitative Spectroscopy and Radiative Transfer, 99(1–3):658–679, 2006. doi:10.1016/j.jqsrt.2005.05.053.

[44]

Nathanael Matthew Gill. Modeling of Warm Dense Plasmas for the Determination of Transport Properties and Equation of State. PhD thesis, Auburn University, 2020. URL: https://auetd.auburn.edu/bitstream/handle/10415/7208/ gill_dissertation%20%283%29.pdf.

[45]

N. D. Mermin. Lindhard dielectric function in the relaxation-time approximation. Physical Review B, 1(5):2362–2363, 1970. doi:10.1103/PhysRevB.1.2362.

[46]

David Pines and David Bohm. A collective description of electron interactions: ii. collective vs individual particle aspects of the interactions. Physical Review, 85(2):338–353, 1952. doi:10.1103/PhysRev.85.338.

[47]

P. Vashishta and K. S. Singwi. Electron correlations at metallic densities. Physical Review B, 6(3):875–887, 1972. doi:10.1103/PhysRevB.6.875.

[48]

Eite Tiesinga, Peter J. Mohr, David B. Newell, and Barry N. Taylor. Codata recommended values of the fundamental physical constants: 2018. Reviews of Modern Physics, 93(2):025010, 2021. doi:10.1103/RevModPhys.93.025010.